Mercurial > repos > bioitcore > splicetrap
view bin/calc_pval.R @ 4:cd336e593a92 draft
planemo upload
| author | bioitcore |
|---|---|
| date | Thu, 07 Sep 2017 16:53:12 -0400 |
| parents | adc0f7765d85 |
| children |
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args = commandArgs(); input_file=args[4]; av=as.numeric(args[5]); sd=as.numeric(args[6]); nu=as.numeric(args[7]); data=read.table(input_file); col=4; x=data[,col]; pup=pnorm(x, mean=av, sd=sd, lower.tail = FALSE); adpup=p.adjust(pup,method="fdr"); pdn=pnorm(x, mean=av, sd=sd, lower.tail = TRUE); adpdn=p.adjust(pdn,method="fdr"); p=pup; size = length(x); for (i in 1:size) { if(x[i]<0) { p[i]=pdn[i]; } } write(p, file=paste(input_file,"p",sep="."),ncolumns=1);
