Mercurial > repos > biopython > package_biopython_1_65

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author peterjc
date Wed, 19 Oct 2016 10:16:46 -0400
parents 030f1a505d40
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1:030f1a505d40 2:d8185f5631ed
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.9"> 3 <package name="numpy" version="1.9">
4 <repository changeset_revision="9cc1138e5e3e" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="83d12e13dbbd" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="biopython" version="1.65"> 6 <package name="biopython" version="1.65">
7 <readme> 7 <readme>
8 This Galaxy Tool Shed package installs Biopython from source, having 8 This Galaxy Tool Shed package installs Biopython from source, having
9 first installed NumPy which is a build time depencency. This requires 9 first installed NumPy which is a build time depencency. This requires
15 15
16 The PYTHONPATH for biopython can be accessed through PYTHONPATH_BIOPYTHON. 16 The PYTHONPATH for biopython can be accessed through PYTHONPATH_BIOPYTHON.
17 </readme> 17 </readme>
18 <install version="1.0"> 18 <install version="1.0">
19 <actions> 19 <actions>
20 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.65.tar.gz</action> 20 <action sha256sum="6d591523ba4d07a505978f6e1d7fac57e335d6d62fb5b0bcb8c40bdde5c8998e" type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.65.tar.gz</action>
21 <action type="set_environment_for_install"> 21 <action type="set_environment_for_install">
22 <repository changeset_revision="9cc1138e5e3e" name="package_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 22 <repository changeset_revision="83d12e13dbbd" name="package_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
23 <package name="numpy" version="1.9" /> 23 <package name="numpy" version="1.9" />
24 </repository> 24 </repository>
25 </action> 25 </action>
26 <action type="make_directory">$INSTALL_DIR/lib/python</action> 26 <action type="make_directory">$INSTALL_DIR/lib/python</action>
27 <action type="shell_command"> 27 <action type="shell_command">