Mercurial > repos > bitlab > bitlab
annotate gecko/frags2align.xml @ 2:ac1ecf12863a draft default tip
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author | bitlab |
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date | Thu, 13 Dec 2018 08:57:14 -0500 |
parents | 35af401890c0 |
children |
rev | line source |
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1 | 1 <tool id="frags2align" name="Frags to align"> |
2 <description>Extract alignments from a binary Frags file</description> | |
3 <inputs> | |
4 <param name="fragsFile" type="data" format="frags" label="Frags file" help="Binary Frags file" /> | |
5 <param name="fastaX" type="data" format="fasta" label="x Genome" help="Single genome file in fasta format"/> | |
6 <param name="fastaY" type="data" value="fasta" label="y Genome" help="Single genome file in fasta format" /> | |
7 </inputs> | |
8 <command>/home/galaxy-bitlab/galaxy/tools/gecko/bin/frags2align.sh $fragsFile $fastaX $fastaY $alignments </command> | |
9 <outputs> | |
10 <data name="alignments" format="txt" label="Frags to align for genomes ${fastaX.name}_${fastaY.name}"/> | |
11 </outputs> | |
12 </tool> | |
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