Mercurial > repos > bitlab > bitlab
view chromeister/bin/run_and_plot_chromeister.sh @ 0:ee6b15b409e5 draft
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author | bitlab |
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date | Thu, 13 Dec 2018 06:27:57 -0500 |
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#!/usr/bin/env bash G1=$1 G2=$2 KMER=$3 DIM=$4 FILE1=$(basename $G1) FILE2=$(basename $G2) BINDIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" if [ $# -lt 4 ]; then echo "***ERROR*** Use: $0 <G1> <G2> <KMER> <DIMENSION>" exit -1 fi (time $BINDIR/CHROMEISTER -query $G1 -db $G2 -kmer $KMER -out $FILE1-$FILE2.mat -dimension $DIM) &> $FILE1-$FILE2.log (Rscript $BINDIR/compute_score.R $FILE1-$FILE2.mat $DIM) &> $FILE1-$FILE2.scr.txt #$BINDIR/plot.R $FILE1-$FILE2.mat #rm $FILE1-$FILE2.mat