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changeset 8:dbdb10e4c8b5 draft

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fixed binary format in frags align
author bitlab
date Tue, 17 Nov 2020 13:04:23 +0000
parents 3872220d0924
children aec70bb1ae27
files gecko/frags2align.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/gecko/frags2align.xml	Tue Nov 17 13:03:09 2020 +0000
+++ b/gecko/frags2align.xml	Tue Nov 17 13:04:23 2020 +0000
@@ -1,9 +1,9 @@
 <tool id="frags2align" name="Frags to align">
   <description>Extract alignments from a binary Frags file</description>
   <inputs>
-    <param name="fragsFile" format="data" label="Frags file" help="Binary Frags file" />
+    <param name="fragsFile" type="data" label="Frags file" help="Binary Frags file" />
     <param name="fastaX" type="data" format="fasta" label="Sequence X" help="Query sequence file in fasta format"/>    
-    <param name="fastaY" type="data" value="fasta" label="Sequence Y" help="Reference sequence file in fasta format" />
+    <param name="fastaY" type="data" format="fasta" label="Sequence Y" help="Reference sequence file in fasta format" />
   </inputs>
   <command> make all -C ${__tool_directory__}/src/ ; ${__tool_directory__}/bin/frags2align.sh $fragsFile $fastaX $fastaY $alignments </command>
   <outputs>