Mercurial > repos > bitlab > imsame
comparison IMSAME/src/Makefile @ 0:762009a91895 draft
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author | bitlab |
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date | Sat, 15 Dec 2018 18:04:10 -0500 |
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-1:000000000000 | 0:762009a91895 |
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1 CC=gcc | |
2 CXX=g++ | |
3 CFLAGS=-O3 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wall #-DVERBOSE | |
4 BIN=../bin | |
5 | |
6 all: IMSAME revcomp combine covident | |
7 | |
8 | |
9 | |
10 IMSAME: IMSAME.c | |
11 $(CC) $(CFLAGS) alignmentFunctions.c -lpthread -lm commonFunctions.c -msse -lm IMSAME.c -lpthread -lm -o $(BIN)/IMSAME | |
12 | |
13 revcomp: reverseComplement.c | |
14 $(CC) $(CFLAGS) commonFunctions.c -lm reverseComplement.c -o $(BIN)/revComp | |
15 | |
16 combine: combine_reads.c | |
17 $(CC) $(CFLAGS) commonFunctions.c -lm combine_reads.c -o $(BIN)/combine | |
18 | |
19 covident: covident.c | |
20 $(CC) $(CFLAGS) covident.c -o $(BIN)/combine | |
21 | |
22 clean: | |
23 rm -rf $(BIN)/IMSAME $(BIN)/revComp $(BIN)/combine |