# HG changeset patch
# User bitlab
# Date 1545066712 18000
# Node ID 7fff03d777dd0c8b3c599ab82baaab645cbc9b35
# Parent  762009a9189549413d3826bdcd02ba2f7a0027fa
Uploaded

diff -r 762009a91895 -r 7fff03d777dd IMSAME/IMSAME.xml
--- a/IMSAME/IMSAME.xml	Sat Dec 15 18:04:10 2018 -0500
+++ b/IMSAME/IMSAME.xml	Mon Dec 17 12:11:52 2018 -0500
@@ -1,15 +0,0 @@
-<tool id="IMSAME" name="IMSAME">
-   <description>A Pairwise Incremental Multi-Staged Alignment Method for Metagenomes Comparison</description>
-   <inputs>
-      <param name="query" type="data" format="fasta" label="Query metagenome" help="Query sequence file in fasta format" />
-      <param name="db" type="data" format="fasta" label="Reference metagenome" help="Reference sequence file in fasta format" />
-      <param name="evalue" type="text" size="30" value="10e-10" label="Evalue" help="Evalue for filtering HSPs" />
-      <param name="coverage" type="float" value="0.5" label="Coverage" help="Minimum coverage to accept an alignment" />
-      <param name="identity" type="float" value="0.5" label="Identity" help="Minimum identity to accept an alignment" />
-      <param name="kmer" type="integer" value="12" label="Word size" help="Word size for heuristicly exploring the search space" />
-   </inputs>
-   <command>/home/galaxy-bitlab/galaxy/tools/IMSAME/bin/IMSAME -query $query -db $db -evalue $evalue -coverage $coverage -identity $identity -kmer $kmer -out $output --full</command>
-  <outputs>
-      <data name="output" type="txt" label="Output alignments"/>
-  </outputs>
-</tool>