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1 <tool id="separate_chain_plidflow" name="PLIDflow: Separate Chains">
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2 <description>Separates chains from a PDB into multiple files</description>
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3 <inputs>
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4 <param name="pdb" type="data" format="pdb" label="PDB file" help="PDB file to be separated into chains"/>
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5 </inputs>
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6 <command><![CDATA[
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7
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8 ${__tool_directory__}/scripts/separateChain.sh ${pdb};
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9
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10
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11 ]]></command>
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12 <outputs>
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13 <data name="Chains" format="pdb">
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14 <discover_datasets pattern="(?P<designation>.+)\.pdb" format="pdb" directory="." visible="true" />
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15 <!-- <discover_datasets pattern="(chain)([a-zA-Z0-9]+)[.](pdb)" format="pdb" directory="." visible="true" /> -->
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16 </data>
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17 </outputs>
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18 </tool>
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