Mercurial > repos > bitlab > plidflow
comparison PLIDflow/separate_chain_plidflow.xml @ 0:6fcfa4756040 draft
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| author | bitlab |
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| date | Tue, 14 Jan 2020 06:09:42 -0500 |
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| -1:000000000000 | 0:6fcfa4756040 |
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| 1 <tool id="separate_chain_plidflow" name="PLIDflow: Separate Chains"> | |
| 2 <description>Separates chains from a PDB into multiple files</description> | |
| 3 <inputs> | |
| 4 <param name="pdb" type="data" format="pdb" label="PDB file" help="PDB file to be separated into chains"/> | |
| 5 </inputs> | |
| 6 <command><![CDATA[ | |
| 7 | |
| 8 ${__tool_directory__}/scripts/separateChain.sh ${pdb}; | |
| 9 | |
| 10 | |
| 11 ]]></command> | |
| 12 <outputs> | |
| 13 <data name="Chains" format="pdb"> | |
| 14 <discover_datasets pattern="(?P<designation>.+)\.pdb" format="pdb" directory="." visible="true" /> | |
| 15 <!-- <discover_datasets pattern="(chain)([a-zA-Z0-9]+)[.](pdb)" format="pdb" directory="." visible="true" /> --> | |
| 16 </data> | |
| 17 </outputs> | |
| 18 </tool> |