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comparison PLIDflow/separate_chain_plidflow.xml @ 6:795e11fac81b draft default tip

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Included new tools for standardization
author bitlab
date Wed, 22 Apr 2020 06:12:00 -0400
parents 6fcfa4756040
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5:97f12f7cc852 6:795e11fac81b
1 <tool id="separate_chain_plidflow" name="PLIDflow: Separate Chains">
2 <description>Separates chains from a PDB into multiple files</description>
3 <inputs>
4 <param name="pdb" type="data" format="pdb" label="PDB file" help="PDB file to be separated into chains"/>
5 </inputs>
6 <command><![CDATA[
7
8 ${__tool_directory__}/scripts/separateChain.sh ${pdb};
9
10
11 ]]></command>
12 <outputs>
13 <data name="Chains" format="pdb">
14 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.pdb" format="pdb" directory="." visible="true" />
15 <!-- <discover_datasets pattern="(chain)([a-zA-Z0-9]+)[.](pdb)" format="pdb" directory="." visible="true" /> -->
16 </data>
17 </outputs>
18 </tool>