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view PLIDflow/scripts/separateChain.sh @ 4:b9e7ec4e3cde draft

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author bitlab
date Mon, 27 Jan 2020 07:12:19 -0500
parents 6fcfa4756040
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#!/bin/bash

# Arguments
# $1 = pdb

grep "ATOM\|HETATM" $1 | awk '{ if(length($5)==1) updateName=$5;   if($1 == "ATOM" || $1 == "HETATM"){ print $0 > "chain"updateName".pdb";  }}' ; 
for i in chain* ; do echo "TER" >> $i ; echo "END" >> $i ; done