# HG changeset patch
# User bitlab
# Date 1580111386 18000
# Node ID d45ae17b447011814bceb5174ce0ab6efb9bbf8f
# Parent  afd5b5ffc38fee31213dad9d9b3d72daa74e116a
Removed modeller which was not necessary anymore

diff -r afd5b5ffc38f -r d45ae17b4470 PLIDflow/modeller_plidflow.xml
--- a/PLIDflow/modeller_plidflow.xml	Tue Jan 14 07:52:48 2020 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,10 +0,0 @@
-<tool id="modeller_plidflow" name="PLIDflow: Modeller">
-  <description>Modeller description</description>
-  <inputs>
-	  <param name="pdbFile" type="data" format="txt" label="PDB file" help="Select a valid PDB file"/>
-  </inputs>
-  <command>mod9.19 $pdbFile $mutantPdbFile0 </command>
-  <outputs>
-    <data name="mutantPdbFile0" format="txt" label="mutant.PDB"/>
-  </outputs>
-</tool>
diff -r afd5b5ffc38f -r d45ae17b4470 PLIDflow/scripts/ADT_VENV/requirements.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PLIDflow/scripts/ADT_VENV/requirements.txt	Mon Jan 27 02:49:46 2020 -0500
@@ -0,0 +1,77 @@
+amqp==1.4.8
+anyjson==0.3.3
+asn1crypto==0.24.0
+Babel==2.5.1
+bcrypt==3.1.4
+Beaker==1.7.0
+bioblend==0.7.0
+boltons==17.1.0
+boto==2.38.0
+boto3==1.6.21
+botocore==1.9.21
+bx-python==0.7.3
+bz2file==0.98
+certifi==2017.7.27.1
+cffi==1.11.5
+chardet==3.0.4
+Cheetah==2.4.4
+cryptography==2.2.2
+decorator==4.0.2
+dictobj==0.3.1
+docopt==0.6.2
+docutils==0.14
+ecdsa==0.13
+enum34==1.1.6
+Fabric==1.13.2
+futures==3.2.0
+galaxy-sequence-utils==1.0.2
+h5py==2.7.1
+idna==2.6
+ipaddress==1.0.18
+jmespath==0.9.3
+kombu==3.0.30
+Mako==1.0.2
+Markdown==2.6.3
+MarkupSafe==1.0
+mercurial==3.7.3
+nose==1.3.7
+numpy==1.8.0
+packaging==16.8
+paramiko==2.2.1
+Parsley==1.3
+Paste==2.0.2
+PasteDeploy==1.5.2
+PasteScript==2.0.2
+pbr==3.1.1
+pkg-resources==0.0.0
+psutil==4.1.0
+pulsar-galaxy-lib==0.8.0
+pyasn1==0.4.2
+pycparser==2.18
+pycrypto==2.6.1
+pykwalify==1.6.0
+PyNaCl==1.2.1
+pyparsing==2.1.1
+pysam==0.14
+python-dateutil==2.5.3
+python-genomespaceclient==0.1.8
+python-swiftclient==3.5.0
+pytz==2017.3
+PyYAML==3.12
+repoze.lru==0.6
+requests==2.18.4
+requests-toolbelt==0.8.0
+Routes==2.4.1
+s3transfer==0.1.13
+six==1.11.0
+SQLAlchemy==1.0.15
+sqlalchemy-migrate==0.11.0
+SQLAlchemy-Utils==0.32.19
+sqlparse==0.1.16
+svgwrite==1.1.6
+Tempita==0.5.3.dev0
+urllib3==1.22
+uWSGI==2.0.15
+WebHelpers==1.3
+WebOb==1.4.1
+Whoosh==2.7.4