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comparison augustus.xml @ 4:796814f16b12

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Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
author bjoern-gruening
date Tue, 30 Oct 2012 06:29:50 -0400
parents d5d5999ff4f1
children a4fab0c1ae1a
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2:d5d5999ff4f1 4:796814f16b12
1 <tool id="augustus" name="Augustus" version="0.1"> 1 <tool id="augustus" name="Augustus" version="0.2">
2 <description>gen prediction for eukaryotic genomes</description> 2 <description>gene prediction for eukaryotic genomes</description>
3 <requirements>
4 <requirement type="package" version="2.6.1">augustus</requirement>
5 </requirements>
3 <command>augustus 6 <command>augustus
4 --strand=$strand 7 --strand=$strand
5 $noInFrameStop 8 $noInFrameStop
6 $gff 9 $gff
7 $protein 10 $protein
111 <change_format> 114 <change_format>
112 <when input="gff" value="--gff3=on" format="gff" /> 115 <when input="gff" value="--gff3=on" format="gff" />
113 </change_format> 116 </change_format>
114 </data> 117 </data>
115 </outputs> 118 </outputs>
116 <requirements>
117 <requirement type="binary">augustus</requirement>
118 </requirements>
119 <help> 119 <help>
120 120
121 **What it does** 121 **What it does**
122 122
123 AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. 123 AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller.