Mercurial > repos > bjoern-gruening > bismark

diff bismark_wrapper/tool_data_table_conf.xml.sample @ 1:183de9d00131 draft

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add indices.loc files
author bjoern-gruening
date Tue, 25 Dec 2012 05:52:28 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bismark_wrapper/tool_data_table_conf.xml.sample	Tue Dec 25 05:52:28 2012 -0500
@@ -0,0 +1,13 @@
+<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
+<tables>
+    <!-- Locations of indexes in the Bowtie mapper format -->
+    <table name="bowtie_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/bowtie_indices.loc" />
+    </table>
+    <!-- Locations of indexes in the Bowtie2 mapper format -->
+    <table name="bowtie2_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/bowtie2_indices.loc" />
+    </table>
+</tables>