--- a/README	Tue Dec 25 05:54:01 2012 -0500
+++ b/README	Fri Mar 01 13:39:22 2013 -0500
@@ -1,8 +1,5 @@
 Bismark uses Bowtie or Bowtie2 to map the reads.
-Create your reference index with bismark_genome_preparation in your
-normal Bowtie2/Botwie index directory. 
-bismark_genome_preparation will create a Bisulfite_Genome folder directly in
-your Bowtie2/Bowtie index directory. If you follow that approach you do not 
-need to specify or modify an extra *.loc file.
-That wrapper will extract the path to the Bisulfite_Genome folder from
-./tool-data/bowtie2_indices.loc or ./tool-data/bowtie_indices.loc.
+
+Create your reference index with bismark_genome_preparation in your normal Bowtie2/Botwie index directory. 
+bismark_genome_preparation will create a Bisulfite_Genome folder directly in your Bowtie2/Bowtie index directory. If you follow that approach you do not need to specify or modify an extra *.loc file.
+That wrapper will extract the path to the Bisulfite_Genome folder from ./tool-data/bowtie2_indices.loc or ./tool-data/bowtie_indices.loc.