Mercurial > repos > bjoern-gruening > diffbind
diff tool_dependencies.xml @ 0:c0f5b2133506 draft default tip
initial commit for DiffBind
| author | bjoern-gruening |
|---|---|
| date | Tue, 14 Jan 2014 18:12:02 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jan 14 18:12:02 2014 -0500 @@ -0,0 +1,47 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R_3_0_1" version="3.0.1"> + <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="deseq2" version="1.0.17"> + <repository changeset_revision="0e80b1827773" name="package_deseq2_1_0_17" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="diffbind" version="1.8.3"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="R_3_0_1" version="3.0.1" /> + </repository> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BiocGenerics_0.8.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/IRanges_1.20.6.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XVector_0.2.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/limma_3.18.9.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gtools_3.1.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gdata_2.13.2.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/bitops_1.0-6.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/caTools_1.16.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Biostrings_2.30.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/GenomicRanges_1.14.4.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RColorBrewer_1.0-5.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/amap_0.8-7.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/edgeR_3.4.2.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/gplots_2.12.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/zlibbioc_1.8.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/Rsamtools_1.14.2.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/DiffBind_1.8.3.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/XML_3.98-1.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/BSgenome_1.30.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/RCurl_1.95-4.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/rtracklayer_1.22.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DiffBind-1_8_3/getopt_1.20.0.tar.gz</package> + </action> + </actions> + </install> + <readme> + Differential Binding Analysis of ChIP-Seq peak data + http://www.bioconductor.org/packages/release/bioc/html/DiffBind.html + </readme> + </package> +</tool_dependency>