0
|
1 <tool id="glimmer orf-to-sequence" name="ORF to Sequence" version="0.1">
|
|
2 <description>assigns ORF to its DNA sequence</description>
|
|
3 <command interpreter="python">glimmer_orf_to_seq.py $glimmer_orfs $input_fasta $output </command>
|
|
4 <inputs>
|
|
5 <param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/>
|
|
6 <param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/>
|
|
7 </inputs>
|
|
8 <outputs>
|
|
9 <data name="output" type="data" format="fasta"/>
|
|
10 </outputs>
|
|
11 <tests>
|
|
12 <test>
|
|
13 </test>
|
|
14 </tests>
|
|
15 <help>
|
|
16
|
|
17 **What it does**
|
|
18
|
|
19
|
|
20 This tool extract all gene sequences from a genome, which are predicted with Glimmer3.
|
|
21
|
|
22
|
|
23 -----
|
|
24
|
|
25 </help>
|
|
26 </tool>
|