Mercurial > repos > bjoern-gruening > glimmer3
comparison glimmer3/glimmer_orf_to_seq.xml @ 0:e11e303c39a4 default tip
Uploaded
author | bjoern-gruening |
---|---|
date | Wed, 11 Jan 2012 09:34:45 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:e11e303c39a4 |
---|---|
1 <tool id="glimmer orf-to-sequence" name="ORF to Sequence" version="0.1"> | |
2 <description>assigns ORF to its DNA sequence</description> | |
3 <command interpreter="python">glimmer_orf_to_seq.py $glimmer_orfs $input_fasta $output </command> | |
4 <inputs> | |
5 <param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/> | |
6 <param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/> | |
7 </inputs> | |
8 <outputs> | |
9 <data name="output" type="data" format="fasta"/> | |
10 </outputs> | |
11 <tests> | |
12 <test> | |
13 </test> | |
14 </tests> | |
15 <help> | |
16 | |
17 **What it does** | |
18 | |
19 | |
20 This tool extract all gene sequences from a genome, which are predicted with Glimmer3. | |
21 | |
22 | |
23 ----- | |
24 | |
25 </help> | |
26 </tool> |