Mercurial > repos > bjoern-gruening > glimmer3
diff glimmer3/glimmer_orf_to_seq.xml @ 0:e11e303c39a4 default tip
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author | bjoern-gruening |
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date | Wed, 11 Jan 2012 09:34:45 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/glimmer3/glimmer_orf_to_seq.xml Wed Jan 11 09:34:45 2012 -0500 @@ -0,0 +1,26 @@ +<tool id="glimmer orf-to-sequence" name="ORF to Sequence" version="0.1"> + <description>assigns ORF to its DNA sequence</description> + <command interpreter="python">glimmer_orf_to_seq.py $glimmer_orfs $input_fasta $output </command> + <inputs> + <param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/> + <param name="glimmer_orfs" type="data" format="tabular" label="Define Glimmer-ORFs"/> + </inputs> + <outputs> + <data name="output" type="data" format="fasta"/> + </outputs> + <tests> + <test> + </test> + </tests> + <help> + +**What it does** + + +This tool extract all gene sequences from a genome, which are predicted with Glimmer3. + + +----- + + </help> +</tool>