<tool id="glimmer_acgt_content" name="ACGT Content" version="0.1">
	<description>ACGT-content of windows in each sequence.</description>
	<command interpreter="python">tigr-glimmer window-acgt $p $output $input_fasta $input_win_len $input_win_skip</command>
	<inputs>
		<param name="input_fasta" type="data" format="fasta" label="Genome Sequence"/>
		<param name="input_win_len" type="integer" value="10" label="The width of windows."/>
		<param name="input_win_skip" type="integer" value="10" label="The number of positions between windows to report."/>
		<param name="p" type="boolean" truevalue="-p" falsevalue="" checked="true" label="Output percentages instead of counts."/>
	</inputs>
	<outputs>
		<data name="output" format="tabular"/>
	</outputs>
	<tests>
		<test>
			<param name="input" value="streptomyces_coelicolor.dna" />
			<output name="output" file="fasta_tool_convert_from_dna.out" />
		</test>
	</tests>
	<help>

**What it does**

This tool calculates the ACGT-Content from a given Sequence, given a sliding window.

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**References**

A.L. Delcher, K.A. Bratke, E.C. Powers, and S.L. Salzberg. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics (Advance online version) (2007).


	</help>
</tool>