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1 <tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
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2 <description>converter</description>
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3 <command interpreter='python'>glimmerhmm_to_sequence.py
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4 $glimmerhmm_input
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5 $genome_input
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6 $output
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7 $to_protein
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8 </command>
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9 <inputs>
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10 <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
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11 <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
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12 <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
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13 </inputs>
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14 <outputs>
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15 <data name="output" format="fasta" />
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16 </outputs>
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17 <help>
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18
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19 **What it does**
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20
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21 It converts the GlimmerHMM GFF output to a Fasta File.
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22
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23 </help>
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24 </tool>
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