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comparison glimmerHMM/glimmerhmm_to_sequence.xml @ 0:0a15677c6668 default tip

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author bjoern-gruening
date Wed, 11 Jan 2012 09:58:35 -0500
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1 <tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
2 <description>converter</description>
3 <command interpreter='python'>glimmerhmm_to_sequence.py
4 $glimmerhmm_input
5 $genome_input
6 $output
7 $to_protein
8 </command>
9 <inputs>
10 <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
11 <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
12 <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
13 </inputs>
14 <outputs>
15 <data name="output" format="fasta" />
16 </outputs>
17 <help>
18
19 **What it does**
20
21 It converts the GlimmerHMM GFF output to a Fasta File.
22
23 </help>
24 </tool>