Galaxy wrapper for InterProScan prediction tools
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InterProScan is a tool that combines different protein signature recognition methods native to the InterPro member databases into one resource with look up of corresponding InterPro and GO annotation.

This wrapper is copyright 2012 by
*  Bjoern Gruening, Pharmaceutical Bioinformatics, University of Freiburg
*  Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter


This prepository contains wrapper for the InterProScan command line tool.
http://www.ebi.ac.uk/interpro/


Zdobnov E.M. and Apweiler R. "InterProScan - an integration platform for the signature-recognition methods in InterPro" Bioinformatics, 2001, 17(9): p. 847-8.



Installation
============

Please download install InterProScan according to:

ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/Installing_InterProScan.txt

Please see also:
ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/index.html

And rebuild the indizes if necessary:

index_data.pl -f interpro.xml -inx -v -bin -bforce
index_data.pl -f match_complete.xml -inx -v -bin -bforce
index_data.pl -f Pfam-A.seed -inx -v -bin -bforce
index_data.pl -f Pfam-C -inx -v -bin -bforce
index_data.pl -f prints.pval -inx -v -bin -bforce
index_data.pl -f sf.seq -inx -v -bin -bforce
index_data.pl -f sf_hmm -inx -v -bin -bforce
index_data.pl -f smart.HMMs -inx -v -bin -bforce
index_data.pl -f superfamily.hmm -inx -v -bin -bforce
index_data.pl -f TIGRFAMs_HMM.LIB -inx -v -bin -bforce

<tool file="iprscan/interproscan.xml" />



History
=======

interproscan:
v0.1 - initial commit



Wrapper Licence (MIT/BSD style)
===============================

Permission to use, copy, modify, and distribute this software and its
documentation with or without modifications and for any purpose and
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