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author bjoern-gruening
date Wed, 11 Jan 2012 04:50:59 -0500
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+Galaxy wrapper for RepeatMasker
+=====================================
+
+This wrapper is copyright 2012 by Björn Grüning.
+
+This is a wrapper for the command line tool of RepeatMasker from the Institute for Systems Biology.
+http://www.repeatmasker.org/
+
+
+Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-3.0.
+1996-2010 <http://www.repeatmasker.org>. 
+
+
+Additional Information:
+Using RepeatMasker to identify repetitive elements in genomic sequences.
+http://www.ncbi.nlm.nih.gov/pubmed/19274634
+
+
+Installation
+============
+
+To install RepeatMasker, please use the following instructions:
+
+http://www.repeatmasker.org/RMDownload.html
+
+To install the wrapper copy the file RepeatMasker.xml in the galaxy tools
+folder and modify the tools_conf.xml file to make the tool available to Galaxy.
+Add a line like the following:
+
+<tool file="RepeatMasker/RepeatMasker.xml" />
+
+
+History
+=======
+
+v0.1 - Initial public release
+
+
+Wrapper Licence (MIT/BSD style)
+===============================
+
+Permission to use, copy, modify, and distribute this software and its
+documentation with or without modifications and for any purpose and
+without fee is hereby granted, provided that any copyright notices
+appear in all copies and that both those copyright notices and this
+permission notice appear in supporting documentation, and that the
+names of the contributors or copyright holders not be used in
+advertising or publicity pertaining to distribution of the software
+without specific prior permission.
+
+THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
+WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
+CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
+OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
+OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
+OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
+OR PERFORMANCE OF THIS SOFTWARE.
+