Mercurial > repos > bjoern-gruening > repeat_masker
diff readme.txt @ 0:13df908a02b0
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author | bjoern-gruening |
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date | Wed, 11 Jan 2012 04:50:59 -0500 |
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children | f8f1a3878edd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.txt Wed Jan 11 04:50:59 2012 -0500 @@ -0,0 +1,59 @@ +Galaxy wrapper for RepeatMasker +===================================== + +This wrapper is copyright 2012 by Björn Grüning. + +This is a wrapper for the command line tool of RepeatMasker from the Institute for Systems Biology. +http://www.repeatmasker.org/ + + +Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-3.0. +1996-2010 <http://www.repeatmasker.org>. + + +Additional Information: +Using RepeatMasker to identify repetitive elements in genomic sequences. +http://www.ncbi.nlm.nih.gov/pubmed/19274634 + + +Installation +============ + +To install RepeatMasker, please use the following instructions: + +http://www.repeatmasker.org/RMDownload.html + +To install the wrapper copy the file RepeatMasker.xml in the galaxy tools +folder and modify the tools_conf.xml file to make the tool available to Galaxy. +Add a line like the following: + +<tool file="RepeatMasker/RepeatMasker.xml" /> + + +History +======= + +v0.1 - Initial public release + + +Wrapper Licence (MIT/BSD style) +=============================== + +Permission to use, copy, modify, and distribute this software and its +documentation with or without modifications and for any purpose and +without fee is hereby granted, provided that any copyright notices +appear in all copies and that both those copyright notices and this +permission notice appear in supporting documentation, and that the +names of the contributors or copyright holders not be used in +advertising or publicity pertaining to distribution of the software +without specific prior permission. + +THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL +WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE +CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT +OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS +OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE +OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE +OR PERFORMANCE OF THIS SOFTWARE. +