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author bjoern-gruening
date Thu, 15 Mar 2012 04:53:54 -0400
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1 Galaxy wrapper for sed
2 ======================
3
4 This wrapper is copyright 2012 by Björn Grüning.
5
6 This is a wrapper for the sed command line tool.
7
8 sed is a stream editor included in every unix-derived operating system.
9 That wrapper only uses a small subset of the sed functionality. Its only a wrapper for:
10
11 sed -r '$pattern' $input
12
13
14 WARNING:
15 ========
16
17 No syntax check and sanitising will happen in that wrapper. This wrapper may harm your computer ;)
18 Nevertheless, i think it can be useable for some installations.
19
20
21 Installation
22 ============
23
24 sed should be available on every unix derived operating system and belongs to the classical unix programms.
25 No further installation is requiered.
26
27 For more information have a look at the following pages:
28
29 http://en.wikipedia.org/wiki/Sed
30 http://www.gnu.org/software/sed/manual/sed.html
31
32 To install the wrapper copy the sed folder in the galaxy tools
33 folder and modify the tools_conf.xml file to make the tool available to Galaxy.
34 For example:
35
36 <toolbox>
37 <tool file="text_manipulation/sed.xml" />
38 </toolbox>
39
40
41 History
42 =======
43
44 v0.1 - Initial public release
45
46
47 Wrapper Licence (MIT/BSD style)
48 ===============================
49
50 Permission to use, copy, modify, and distribute this software and its
51 documentation with or without modifications and for any purpose and
52 without fee is hereby granted, provided that any copyright notices
53 appear in all copies and that both those copyright notices and this
54 permission notice appear in supporting documentation, and that the
55 names of the contributors or copyright holders not be used in
56 advertising or publicity pertaining to distribution of the software
57 without specific prior permission.
58
59 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
60 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
61 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
62 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
63 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
64 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
65 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
66 OR PERFORMANCE OF THIS SOFTWARE.
67