Mercurial > repos > bjoern-gruening > sed_wrapper
diff readme.txt @ 0:e850a63e5aed
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author | bjoern-gruening |
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date | Thu, 15 Mar 2012 04:53:54 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.txt Thu Mar 15 04:53:54 2012 -0400 @@ -0,0 +1,67 @@ +Galaxy wrapper for sed +====================== + +This wrapper is copyright 2012 by Björn Grüning. + +This is a wrapper for the sed command line tool. + +sed is a stream editor included in every unix-derived operating system. +That wrapper only uses a small subset of the sed functionality. Its only a wrapper for: + +sed -r '$pattern' $input + + +WARNING: +======== + +No syntax check and sanitising will happen in that wrapper. This wrapper may harm your computer ;) +Nevertheless, i think it can be useable for some installations. + + +Installation +============ + +sed should be available on every unix derived operating system and belongs to the classical unix programms. +No further installation is requiered. + +For more information have a look at the following pages: + +http://en.wikipedia.org/wiki/Sed +http://www.gnu.org/software/sed/manual/sed.html + +To install the wrapper copy the sed folder in the galaxy tools +folder and modify the tools_conf.xml file to make the tool available to Galaxy. +For example: + +<toolbox> + <tool file="text_manipulation/sed.xml" /> +</toolbox> + + +History +======= + +v0.1 - Initial public release + + +Wrapper Licence (MIT/BSD style) +=============================== + +Permission to use, copy, modify, and distribute this software and its +documentation with or without modifications and for any purpose and +without fee is hereby granted, provided that any copyright notices +appear in all copies and that both those copyright notices and this +permission notice appear in supporting documentation, and that the +names of the contributors or copyright holders not be used in +advertising or publicity pertaining to distribution of the software +without specific prior permission. + +THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL +WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE +CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT +OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS +OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE +OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE +OR PERFORMANCE OF THIS SOFTWARE. +