Mercurial > repos > bjoern-gruening > trim_galore

view tool_dependencies.xml @ 0:2fd029916856 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
initial commit
author bjoern-gruening
date Tue, 25 Dec 2012 05:55:53 -0500
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="cutadapt" version="1.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://cutadapt.googlecode.com/files/cutadapt-1.1.tar.gz</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="move_directory_files">
                    <source_directory>cutadapt</source_directory>
                    <destination_directory>$INSTALL_DIR/cutadapt</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
    <package name="fastqc" version="0.10.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
                <action type="move_directory_files">
                    <source_directory>../FastQC/</source_directory>
                    <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        FastQC needs a java Runtime Environment.
        </readme>
    </package>
</tool_dependency>