Mercurial > repos > blankenberg > naive_variant_caller
annotate test-data/phiX174.fasta @ 14:5c852eca82e0 draft
planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/tools/naive_variant_caller commit a1f39a3e28911591f6a1ed58a43e95e0baf5e750
author | blankenberg |
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date | Wed, 28 Feb 2018 15:54:57 -0500 |
parents | ae6edc0012ba |
children |
rev | line source |
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1
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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1 >phiX174 |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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2 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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3 GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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4 ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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5 TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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6 GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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7 TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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8 TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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9 CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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10 TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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11 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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12 GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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13 CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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14 TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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15 AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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16 CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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17 TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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18 TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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19 CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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20 GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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21 GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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22 ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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23 TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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24 TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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25 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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26 CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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27 GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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28 CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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29 TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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30 TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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31 TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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32 AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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33 TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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34 ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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35 GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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36 TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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37 TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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38 TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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39 TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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40 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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41 AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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changeset
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42 CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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changeset
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43 TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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44 CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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45 AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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46 GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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47 GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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48 TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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49 CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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50 TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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51 GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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52 CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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53 TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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54 AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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55 TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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56 CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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57 TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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58 TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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59 CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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60 TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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61 ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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62 TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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63 ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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64 GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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65 CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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66 GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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67 GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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68 ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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69 CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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70 CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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71 GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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72 CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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73 CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
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74 TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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75 TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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76 TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
changeset
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77 AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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78 TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA |
ae6edc0012ba
Populate naive_variant_caller repository.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff
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79 |