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view test-data/fake_phiX174_reads_1_test_out_1.vcf @ 1:ae6edc0012ba

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Populate naive_variant_caller repository.
author Daniel Blankenberg <dan@bx.psu.edu>
date Thu, 29 Aug 2013 10:54:14 -0400
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children 07e71cf6c8ef
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##fileformat=VCFv4.1
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##FORMAT=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##FORMAT=<ID=NC,Number=.,Type=String,Description="Nucleotide and indel counts">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A Fake phiX Sample
phiX174	1411	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=1,
phiX174	1412	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=3,
phiX174	1413	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=5,
phiX174	1414	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=6,
phiX174	1415	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=7,
phiX174	1416	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=8,
phiX174	1417	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=9,
phiX174	1418	.	T	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::T=10,
phiX174	1419	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1420	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1421	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=10,
phiX174	1422	.	T	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::T=10,
phiX174	1423	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1424	.	C	A	.	.	AC=7;AF=0.7	GT:AC:AF:NC	1/0:7:0.7:A=7,C=3,
phiX174	1425	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1426	.	T	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::T=10,
phiX174	1427	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1428	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=10,
phiX174	1429	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1430	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1431	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1432	.	T	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::T=10,
phiX174	1433	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=10,
phiX174	1434	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1435	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1436	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1437	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=10,
phiX174	1438	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1439	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=10,
phiX174	1440	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1441	.	T	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::T=10,
phiX174	1442	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=10,
phiX174	1443	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=10,
phiX174	1444	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1445	.	C	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::C=10,
phiX174	1446	.	C	T	.	.	AC=3;AF=0.3	GT:AC:AF:NC	0/1:3:0.3:C=7,T=3,
phiX174	1447	.	T	A	.	.	AC=2;AF=0.222222222222	GT:AC:AF:NC	0/0:2:0.222222222222:A=2,T=7,
phiX174	1448	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=7,
phiX174	1449	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=5,
phiX174	1450	.	T	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::T=4,
phiX174	1451	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=3,
phiX174	1452	.	A	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::A=2,
phiX174	1453	.	G	.	.	.	AC=;AF=	GT:AC:AF:NC	0/0:::G=1,