--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_refgenie_pull.py	Fri Sep 10 12:56:54 2021 +0000
@@ -0,0 +1,42 @@
+#!/usr/bin/env python
+
+
+import argparse
+import logging
+from base64 import urlsafe_b64encode
+from urllib.parse import urljoin
+
+import refgenconf
+import requests
+
+
+log = logging.getLogger("tools.iuc.data_managers.data_manager_refgenie_pull")
+
+
+def galaxy_code_get_refgenie_assets(refgenie_config_file):
+    rgc = refgenconf.RefGenConf(refgenie_config_file)
+    rval = []
+    for urlname, genomes in rgc.listr().items():
+        urlname_64 = urlsafe_b64encode(bytes(urlname, 'utf8')).decode('utf8')
+        ul = []
+        for genome, assets in genomes.items():
+            al = []
+            for name in assets:
+                al.append({'name': name, 'value': '%s/%s/%s' % (urlname_64, genome, name), 'options': [], 'selected': False})
+            ul.append({'name': genome, 'value': genome, 'options': al, 'selected': False})
+        rval.append({'name': urlname, 'value': urlname_64, 'options': ul, 'selected': False})
+    return rval
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser()
+    parser.add_argument('-n', '--names', dest='names', action='store', default=None, help='Table names to reload')
+    parser.add_argument('-u', '--url', dest='url', action='store', default=None, help='Base url for reload')
+    parser.add_argument('-k', '--key', dest='key', action='store', default=None, help='Galaxy API Key')
+
+    args = parser.parse_args()
+    if not args.names:
+        tables = requests.get(urljoin(args.url, "api/tool_data"), params={'key': args.key}).json()
+        args.names = [d.get('name') for d in tables]
+    for name in args.names:
+        print(requests.get(urljoin(args.url, "api/tool_data/%s/reload" % (name)), params={'key': args.key}).json())