Mercurial > repos > bonsai > sortmerna
comparison tool-data/rRNA_databases.loc.sample @ 0:2e7f0da431e3 draft default tip
Uploaded version 1.0
| author | bonsai |
|---|---|
| date | Tue, 30 Apr 2013 13:12:35 -0400 |
| parents | |
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| -1:000000000000 | 0:2e7f0da431e3 |
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| 1 #This is a sample file distributed with Galaxy that is used to define a | |
| 2 #list of public ribosomal databases, using three columns tab separated | |
| 3 #(longer whitespace are TAB characters): | |
| 4 # | |
| 5 #<unique_id> <database_caption> <base_name_path> | |
| 6 # | |
| 7 #It is important that the actual database name does not have a space in it, | |
| 8 #and that the first tab that appears in the line is right before the path. | |
| 9 # | |
| 10 #So, for example, if your database is rfam-5.8s and the path to your base name | |
| 11 #is /data/rRNA_databases/rfam-5.8s, then the rRNA_databases.loc entry would look like this: | |
| 12 # | |
| 13 #rfam-5.8s Rfam 5.8S eukarya /data/rRNA_databases/rfam-5.8s | |
| 14 # | |
| 15 #Since SortMeRNA comes bundled with eight ribosomal databases, which are ready | |
| 16 #for use after the tool installation, this sample file is in fact an actual file | |
| 17 #to save the user the trouble of setting it. | |
| 18 # | |
| 19 rfam-5.8s Rfam 5.8S eukarya $SORTMERNADIR/rRNA_databases/rfam-5.8s-database-id98.fasta | |
| 20 rfam-5s Rfam 5S archaea/bacteria $SORTMERNADIR/rRNA_databases/rfam-5s-database-id98.fasta | |
| 21 silva-arc-16s SILVA 16S archaea $SORTMERNADIR/rRNA_databases/silva-arc-16s-database-id95.fasta | |
| 22 silva-arc-23s SILVA 16S bacteria $SORTMERNADIR/rRNA_databases/silva-arc-23s-database-id98.fasta | |
| 23 silva-bac-16s SILVA 16S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-16s-database-id85.fasta | |
| 24 silva-bac-23s SILVA 23S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-23s-database-id98.fasta | |
| 25 silva-euk-18s SILVA 18S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-18s-database-id95.fasta | |
| 26 silva-euk-28s SILVA 28S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-28s-database-id98.fasta |