Mercurial > repos > boris > package_ape_3_0

comparison tool_dependencies.xml @ 0:423395d792df draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded xml
author boris
date Mon, 03 Feb 2014 12:57:17 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:423395d792df
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="2.15.0">
4 <repository changeset_revision="7fb1a5b1b6ba" name="package_r_2_15_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="ape" version="3.0-8">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">http://cran.at.r-project.org/src/contrib/Archive/ape/ape_3.0-8.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="7fb1a5b1b6ba" name="package_r_2_15_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu">
12 <package name="R" version="2.15.0" />
13 </repository>
14 </action>
15 <action type="make_directory">$INSTALL_DIR</action>
16 <action type="shell_command"> export PATH=$PATH &amp;&amp; export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp; R CMD INSTALL . -l $INSTALL_DIR </action>
17 <action type="set_environment">
18 <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable>
19 <environment_variable action="prepend_to" name="R_HOME">$ENV[R_HOME]</environment_variable>
20 <environment_variable action="prepend_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable>
21 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
22 </action>
23 </actions>
24 </install>
25 <readme> ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees</readme>
26 </package>
27 </tool_dependency>