Mercurial > repos > bornea > filter_fasta
comparison filter_fasta.py @ 12:05d48b118f81 draft
Uploaded
author | bornea |
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date | Tue, 16 Aug 2016 20:42:38 -0400 |
parents | 573c36ff075f |
children | d66c62c6c56f |
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11:573c36ff075f | 12:05d48b118f81 |
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86 x.close() | 86 x.close() |
87 fasta = sys.argv[1] # fasta file to filter | 87 fasta = sys.argv[1] # fasta file to filter |
88 data = sys.argv[2] # scaffold report #2 -- filename | 88 data = sys.argv[2] # scaffold report #2 -- filename |
89 | 89 |
90 FilterFastaSeq(fasta,getAccessions(data)) | 90 FilterFastaSeq(fasta,getAccessions(data)) |
91 os.rename("output.txt", "output1.txt") | 91 os.rename("output.txt", sys.argv[3]) |