Mercurial > repos > bornea > filter_fasta

comparison filter_fasta.py @ 12:05d48b118f81 draft

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author bornea
date Tue, 16 Aug 2016 20:42:38 -0400
parents 573c36ff075f
children d66c62c6c56f
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11:573c36ff075f 12:05d48b118f81
86 x.close() 86 x.close()
87 fasta = sys.argv[1] # fasta file to filter 87 fasta = sys.argv[1] # fasta file to filter
88 data = sys.argv[2] # scaffold report #2 -- filename 88 data = sys.argv[2] # scaffold report #2 -- filename
89 89
90 FilterFastaSeq(fasta,getAccessions(data)) 90 FilterFastaSeq(fasta,getAccessions(data))
91 os.rename("output.txt", "output1.txt") 91 os.rename("output.txt", sys.argv[3])