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comparison filter_fasta.xml @ 0:c8b26d6d385b draft

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author bornea
date Thu, 04 Aug 2016 12:08:28 -0400
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1 <tool id="filterfasta" name="Filter FASTA">
2 <description></description>
3 <command interpreter="python">filter_fatsa.py $input1 $input2 $output</command>
4 <inputs>
5 <param format="txt" name="input1" type="data" label="FASTA Database"/>
6 <param format="txt" name="input2" type="data" label="Scaffold Report"/>
7 </inputs>
8 <outputs>
9 <data format="txt" name="output" label="Merged Scaffold Report"/>
10 </outputs>
11 <stdio>
12 <regex match="Error|error"
13 source="stdout"
14 level="fatal"
15 description="Unknown error"/>
16 <regex match="Error|error"
17 source="stderr"
18 level="fatal"
19 description="Unknown error"/>
20 <regex match="Error: bad bait"
21 source="stdout"
22 level="fatal"
23 description="Error: bad bait"/>
24 </stdio>
25 <tests>
26 <test>
27 <param name="input" value="fa_gc_content_input.fa"/>
28 <output name="out_file1" file="fa_gc_content_output.txt"/>
29 </test>
30 </tests>
31 <help>
32 </help>
33 </tool>