Mercurial > repos > bornea > filter_fasta
view filter_fasta.xml @ 11:573c36ff075f draft
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author | bornea |
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date | Tue, 16 Aug 2016 20:40:19 -0400 |
parents | 489b560129c8 |
children | 55990dea42fb |
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<tool id="filter_fasta" name="Filter FASTA"> <description></description> <command interpreter="python">filter_fasta.py $fasta_input $scaf_input $fasta_output</command> <inputs> <param format="fasta" name="fasta_input" type="data" label="FASTA Database"/> <param format="txt" name="scaf_input" type="data" label="Scaffold Report"/> </inputs> <outputs> <data format="fasta" name="fasta_output" label="Filtered FASTA"/> </outputs> <stdio> <regex match="Error|error" source="stdout" level="fatal" description="Unknown error"/> <regex match="Error|error" source="stderr" level="fatal" description="Unknown error"/> <regex match="Error: bad bait" source="stdout" level="fatal" description="Error: bad bait"/> </stdio> <tests> <test> <param name="input" value="fa_gc_content_input.fa"/> <output name="out_file1" file="fa_gc_content_output.txt"/> </test> </tests> <help> </help> </tool>