# HG changeset patch
# User bornea
# Date 1470517241 14400
# Node ID af454e5a9ef5bc73d67b79aa65d1befe2efb6445
# Parent  489b560129c8192b7dfef403ceb7b5fe519cb6cf
Uploaded

diff -r 489b560129c8 -r af454e5a9ef5 filter_fasta.py
--- a/filter_fasta.py	Sat Aug 06 16:57:14 2016 -0400
+++ b/filter_fasta.py	Sat Aug 06 17:00:41 2016 -0400
@@ -1,4 +1,4 @@
-# -*- coding: utf-8 -*-
+
 """
 Python-code: Merge Scaffold Samples Report files
 @author = Brent Kuenzi
@@ -22,6 +22,7 @@
             line = line.strip()
             temp = line.split('\t')
             output.append(temp)
+            print temp
     return output
 def getAccessions(infile): # get list of protein accessions from your data
     data = readtab(infile)
@@ -82,6 +83,7 @@
     with open("output.fasta","wt") as x:
         for i in header:
             x.write(i+'\n'+seq[cnt]+'\n')
+            print i+'\n'+seq[cnt]+'\n'
             cnt+=1
 fasta = sys.argv[1] # fasta file to filter
 data = sys.argv[2] # scaffold report #2 -- filename