--- a/MergeFiles.py	Wed Aug 03 15:15:54 2016 -0400
+++ b/MergeFiles.py	Wed Aug 03 15:22:44 2016 -0400
@@ -7,16 +7,20 @@
 import sys
 import urllib2
 import os.path
-import pandas
+import pandas as pd
 #######################################################################################
 ## Description: ##
 #    This program will merge either 2 or 3 scaffold
 #    sample report files together
 ## Required input: ##
 infile1 = sys.argv[1] # scaffold report #1 -- filename
+print infile1
 infile2 = sys.argv[2] # scaffold report #2 -- filename
+print infile2
 infile3 = sys.argv[3] # scaffold report #3 -- filename or "False"
+print infile3
 baitfile = sys.argv[4] # Bait file -- filename
+print baitfile
 outfile = sys.argv[5] # output filename
 class ScaffoldReturn(object):
     def __init__(self, getdata, getproteins, getheader):