Mercurial > repos > bornea > merge_scaffold

changeset 2:fc8b0358acac draft

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Uploaded
author bornea
date Wed, 27 Jul 2016 16:21:39 -0400
parents ac70e256399c
children c1199500c601
files MergeFiles.xml
diffstat 1 files changed, 2 insertions(+), 13 deletions(-) [+]
line wrap: on
line diff
--- a/MergeFiles.xml	Tue Jul 26 16:17:25 2016 -0400
+++ b/MergeFiles.xml	Wed Jul 27 16:21:39 2016 -0400
@@ -1,9 +1,6 @@
 <tool id="MergeScaffold" name="Merge Scaffold">
   <description></description>
-  <command interpreter="python">MergeFiles.py $input1 $input2 $input3 $baitfile $merged \$INSTALL_RUN_PATH/</command>
-  <requirements>
-    <requirement type="set_environment">INSTALL_RUN_PATH</requirement>
-  </requirements>
+  <command interpreter="python">MergeFiles.py $input1 $input2 $input3 $baitfile $merged</command>
   <inputs>
     <param format="txt" name="input1" type="data" label="Scaffold Output 1"/>
     <param format="txt" name="input2" type="data" label="Scaffold Output 2"/>
@@ -34,14 +31,6 @@
     </test>
   </tests>
   <help>
-Query CRAPome
--------------
-This program will read in a SAINT formatted *Prey* file or a single column list (no column name) of Uniprot accessions (e.g. "P00533" or "EGFR_HUMAN"), query the  CRAPome database (v1.1) http://crapome.org, and return a file specifying the prevalence of each protein in the CRAPome.
-
-**1) Input File**
-SAINT formatted *Prey* file or a single column list (no column name) of Uniprot accessions.
-
-**2) Species**
-Please specify species. Supported species are Human and Yeast.
+    This program will merge either 2 or 3 scaffold sample report files together.
   </help>
 </tool>
\ No newline at end of file