# HG changeset patch
# User bornea
# Date 1508354962 14400
# Node ID 65551439a6bb5ed803722ae4869786c9218ed7bf
# Parent 8adf6ccd1077ea5316752c6dbd79c0635fa893ef
Uploaded
diff -r 8adf6ccd1077 -r 65551439a6bb plot_adjacency.py
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/plot_adjacency.py Wed Oct 18 15:29:22 2017 -0400
@@ -0,0 +1,240 @@
+import sys
+def readTab(infile): # read in txt file
+ with open(infile, 'r') as input_file:
+ # read in tab-delim text
+ output = []
+ for input_line in input_file:
+ input_line = input_line.strip()
+ temp = input_line.split('\t')
+ output.append(temp)
+ return output
+def network2JSON(nodes_att_file, edge_file):
+ nodes = readTab(nodes_att_file)
+ edges = readTab(edge_file)
+
+ start = """{"nodes": ["""
+ node_numbers = {}
+ cnt=0
+ for i in nodes[1:]:
+ node_numbers[i[0]] = cnt
+ cnt+=1
+ start = start + '{"name":'+'"'+i[0]+'", "EV":'+i[2]+', "group":'+i[1]+"},"
+ start = start[:-1]
+ start = start+"""], "links": ["""
+ for i in edges:
+ start = start + """{"source":"""+str(node_numbers[i[0]])+""","target":"""+str(node_numbers[i[1]])+""","value":1},"""
+ start = start[:-1]
+ start = start + """]}"""
+ return start
+def labelCentrality(nodes_att_file):
+ nodes = readTab(nodes_att_file)
+ if nodes[0][2] == "eigen":
+ return "Eigenvector Centrality"
+ if nodes[0][2] == "closeness":
+ return "Closeness Centrality"
+ if nodes[0][2] == "betweenness":
+ return "Betweenness Centrality"
+ if nodes[0][2] == "page":
+ return "Page Rank"
+
+
+
+adjacency_start = """
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