Mercurial > repos > bornea > plot_force_ev
view PlotForce_EV.xml @ 0:98078b04e474 draft
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author | bornea |
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date | Wed, 18 Oct 2017 15:35:30 -0400 |
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<tool id="plot_force_EV" name="Plot Network: Force Directed Network - Scaled Nodes"> <description></description> <command interpreter="python">plotForce_EV.py $node_attr $edges $ForceDirected_EV \$INSTALL_RUN_PATH/</command> <requirements> <requirement type="set_environment">INSTALL_RUN_PATH</requirement> </requirements> <inputs> <param format="tabular" name="node_attr" type="data" label="Node Attribute File"/> <param type="sif" name="edges" type = data label="Network File"/> </inputs> <outputs> <data format="html" name="ForceDirected_EV" label="Scaled Force Directed Network"/> </outputs> <stdio> <regex match="Error|error" source="stdout" level="fatal" description="Unknown error"/> <regex match="Error|error" source="stderr" level="fatal" description="Unknown error"/> </stdio> <tests> <test> <param name="input" value="fa_gc_content_input.fa"/> <output name="out_file1" file="fa_gc_content_output.txt"/> </test> </tests> <help> Plot Force Directed Network ---------------------------------------- This tool reads in a network SIF file and it's corresponding node attributes and plots an interactive force directed network with node size scaled on centrality in HMTL format **1) Node Attributes File ** This file must be output from Network Attributes Tool of the network file being input below. **2) Network File** Please input a network SIF file matching the Node Attribute file above </help> </tool>