Mercurial > repos > bornea > prohits_dotplot_generator

comparison ProHits_DotPlot_Generator.py @ 27:63cc1f29a57b draft

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Uploaded
author bornea
date Tue, 19 Apr 2016 11:37:44 -0400
parents cfac73f960c8
children 16df07f285c0
comparison
equal deleted inserted replaced
26:c0b883652821 27:63cc1f29a57b
42 os.system(cmd) 42 os.system(cmd)
43 43
44 44
45 cmd = (str(ins_path) + r"Dotplot_Release/dotplot.bash -f saint_input.txt" + r" -c b -s " + str(FDR1) + 45 cmd = (str(ins_path) + r"Dotplot_Release/dotplot.bash -f saint_input.txt" + r" -c b -s " + str(FDR1) +
46 r" -t " + str(FDR2) + " -m " + str(spec_max)) 46 r" -t " + str(FDR2) + " -m " + str(spec_max))
47 os.system(cmd) 47 try:
48 os.system(cmd)
49 cmd1 = r"cp -a ./Output_saint_input/. ."
50 os.system(cmd1)
51 os.rename("saint_input.txt", str(sys.argv[1]))
52 except:
53 os.rename("saint_input.txt", str(sys.argv[1]))
54 print "DotPlot did not run correctly"
55 sys.exit()
48 56
49 cmd1 = r"cp -a ./Output_saint_input/. ."
50 os.system(cmd1)
51 57
52 os.rename("saint_input.txt", str(sys.argv[1])) 58
59
53 os.rename('dotplot.pdf', str(sys.argv[5])) 60 os.rename('dotplot.pdf', str(sys.argv[5]))
54 os.rename('bait2bait.pdf', str(sys.argv[6])) 61 os.rename('bait2bait.pdf', str(sys.argv[6]))
55 os.rename('estimated.pdf', str(sys.argv[7])) 62 os.rename('estimated.pdf', str(sys.argv[7]))
56 os.rename('stats.pdf', str(sys.argv[8])) 63 os.rename('stats.pdf', str(sys.argv[8]))