Mercurial > repos > bornea > prohits_dotplot_generator

comparison ProHits_DotPlot_Generator.py @ 19:c1017fb6bb0d draft

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Uploaded
author bornea
date Thu, 14 Apr 2016 16:28:43 -0400
parents d458f5c875f1
children 3555f2c0d325
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18:7d59acf99322 19:c1017fb6bb0d
26 26
27 27
28 FDR1 = sys.argv[2] 28 FDR1 = sys.argv[2]
29 FDR2 = sys.argv[3] 29 FDR2 = sys.argv[3]
30 spec_max = sys.argv[4] 30 spec_max = sys.argv[4]
31 os.rename(sys.argv[1], "saint_input.txt") 31 file_name = sys.argv[1]
32 input_file = file_name.split("/")[-1]
33 os.rename(input_file, "saint_input.txt")
32 ins_path = sys.argv[9] 34 ins_path = sys.argv[9]
33 35
34 dirs_list = [] 36 dirs_list = []
35 for (dirpath, dirnames, filename) in os.walk(str(ins_path)): 37 for (dirpath, dirnames, filename) in os.walk(str(ins_path)):
36 dirs_list.extend(dirnames) 38 dirs_list.extend(dirnames)