Mercurial > repos > bornea > prohits_dotplot_generator

comparison ProHits_DotPlot_Generator.py @ 21:cfac73f960c8 draft

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Uploaded
author bornea
date Thu, 14 Apr 2016 16:34:43 -0400
parents 3555f2c0d325
children 63cc1f29a57b
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20:3555f2c0d325 21:cfac73f960c8
26 26
27 27
28 FDR1 = sys.argv[2] 28 FDR1 = sys.argv[2]
29 FDR2 = sys.argv[3] 29 FDR2 = sys.argv[3]
30 spec_max = sys.argv[4] 30 spec_max = sys.argv[4]
31 file_name = sys.argv[1] 31 os.rename(sys.argv[1], "saint_input.txt")
32 cmd0 = "cp " + str(file_name) + " ./"
33 os.system(cmd0)
34 input_file = file_name.split("/")[-1]
35 os.rename(input_file, "saint_input.txt")
36 ins_path = sys.argv[9] 32 ins_path = sys.argv[9]
37 33
38 dirs_list = [] 34 dirs_list = []
39 for (dirpath, dirnames, filename) in os.walk(str(ins_path)): 35 for (dirpath, dirnames, filename) in os.walk(str(ins_path)):
40 dirs_list.extend(dirnames) 36 dirs_list.extend(dirnames)