Mercurial > repos > bornea > query_crapome

comparison CRAPomeQuery.py @ 12:577611df296d draft

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Uploaded
author bornea
date Mon, 25 Apr 2016 11:22:51 -0400
parents 6fe48eb42c55
children eb51efc01e35
comparison
equal deleted inserted replaced
11:659644782ecd 12:577611df296d
121 unique+=1 121 unique+=1
122 j[2] = i[0] # change to user input 122 j[2] = i[0] # change to user input
123 filt.append(j) 123 filt.append(j)
124 flag +=1 124 flag +=1
125 if flag == 0: # if protein is not present in CRAPome database then add it 125 if flag == 0: # if protein is not present in CRAPome database then add it
126 filt.append(["\t", "\t", i[0], "Invalid identifier / gene not available"]) 126 filt.append(["\t", "\t", i[0], "Invalid identifier / gene not available","\t","\t","\t"])
127 total = 0 # Experiment counter 127 total = 0 # Experiment counter
128 query = [] 128 query = []
129 for i in filt: # Create CRAPome file as list 129 for i in filt: # Create CRAPome file as list
130 temp=[] 130 temp=[]
131 if len(i) > 5: 131 if len(i) > 5: