Mercurial > repos > bornea > query_crapome

comparison CRAPomeQuery.py @ 19:f1459638e1bc draft default tip

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Uploaded
author bornea
date Fri, 29 Apr 2016 15:49:34 -0400
parents 378fc3676c78
children
comparison
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18:edde2724910f 19:f1459638e1bc
104 genename = lst2[0] 104 genename = lst2[0]
105 return ReturnValue1(uniprot_acc, genename, swissprot) 105 return ReturnValue1(uniprot_acc, genename, swissprot)
106 if 'GN=' not in name_info: 106 if 'GN=' not in name_info:
107 genename = 'NA' 107 genename = 'NA'
108 return ReturnValue1(uniprot_acc, genename, swissprot) 108 return ReturnValue1(uniprot_acc, genename, swissprot)
109 if sp = ">sp": 109 if sp == ">sp":
110 error.close() 110 error.close()
111 else: 111 else:
112 error.write(uniprot_accession_in + '\t' + "Blank Fasta" + '\n') 112 error.write(uniprot_accession_in + '\t' + "Blank Fasta" + '\n')
113 error.close 113 error.close
114 uniprot_acc = 'NA' 114 uniprot_acc = 'NA'