Mercurial > repos > bornea > query_crapome

comparison CRAPomeQuery.py @ 13:eb51efc01e35 draft

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author bornea
date Mon, 25 Apr 2016 11:30:53 -0400
parents 577611df296d
children b451afff1aad
comparison
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12:577611df296d 13:eb51efc01e35
132 cnt=0 132 cnt=0
133 temp.append(i[2]) # append accession 133 temp.append(i[2]) # append accession
134 temp.append(i[0]) # append gene name 134 temp.append(i[0]) # append gene name
135 ave = [] 135 ave = []
136 total = len(i[3:]) # calculate total experiments 136 total = len(i[3:]) # calculate total experiments
137 for j in i[3:]: 137 for j in i[3:]:
138 print j
138 if j != '0': 139 if j != '0':
139 ave.append(int(j)) # calculate Ave.SC on only experiments with ID 140 ave.append(int(j)) # calculate Ave.SC on only experiments with ID
140 cnt+=1 141 cnt+=1
141 temp.append(str(cnt) + " / "+str(total)) # format ratio 142 temp.append(str(cnt) + " / "+str(total)) # format ratio
142 if ave != []: 143 if ave != []: