Mercurial > repos > bornea > query_crapome
changeset 8:6fe48eb42c55 draft
Uploaded
| author | bornea |
|---|---|
| date | Mon, 18 Apr 2016 12:23:24 -0400 |
| parents | 9c72c51d858d |
| children | f561ac1afa70 |
| files | CRAPomeQuery.py |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/CRAPomeQuery.py Mon Apr 18 12:21:20 2016 -0400 +++ b/CRAPomeQuery.py Mon Apr 18 12:23:24 2016 -0400 @@ -5,6 +5,12 @@ @author: brentkuenzi """ ################################################################################ +## Dependencies ## +import urllib2 +import sys +import numpy +import os +################################################################################ # This program will read in a SAINT formatted 'prey.txt' file or a file # containing a single column list of uniprot accessions (e.g. "P00533" or # "EGFR_HUMAN")query the CRAPome database (v1.1), and return a file specifying @@ -25,12 +31,6 @@ species = sys.argv[2] # HUMAN or YEAST db_path = sys.argv[4] ################################################################################ -## Dependencies ## -import urllib2 -import sys -import numpy -import os -################################################################################ ## Global Variables ## if species == "HUMAN": database = str(db_path) + "Human_CRAPome_v1-1.txt"