Mercurial > repos > bornea > saint_bubblebeam

comparison Bubblebeam_For_SAINT_wrapper.xml @ 16:54102aee991e draft

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author bornea
date Fri, 20 Nov 2015 11:10:04 -0500
parents fcfcbdcde66f
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15:97066b155111 16:54102aee991e
1 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT"> 1 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT">
2 <description></description> 2 <description></description>
3 <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/ \$R_ROOT_DIR/</command> 3 <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command>
4 <requirements> 4 <requirements>
5 <requirement type="set_environment">INSTALL_RUN_PATH</requirement> 5 <requirement type="set_environment">INSTALL_RUN_PATH</requirement>
6 <requirement type="package" version="3.2.1">package_r_3_2_1</requirement> 6 <requirement type="package" version="3.2.1">package_r_3_2_1</requirement>
7 <requirement type="set_environment">R_ROOT_DIR</requirement>
8 </requirements> 7 </requirements>
9 <inputs> 8 <inputs>
10 <param type="select" name="type" label="MaxQuant or Scaffold"> 9 <param type="select" name="type" label="MaxQuant or Scaffold">
11 <option value="MQ">MaxQuant</option> 10 <option value="MQ">MaxQuant</option>
12 <option value="SC">Scaffold</option> 11 <option value="SC">Scaffold</option>