Mercurial > repos > bornea > saint_bubblebeam

comparison Bubblebeam_For_SAINT_wrapper.py @ 29:f7b1fe03fb5b draft default tip

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author bornea
date Fri, 29 Jan 2016 09:39:22 -0500
parents cb7223752458
children
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28:24d4f1350c83 29:f7b1fe03fb5b
56 if label == "false": 56 if label == "false":
57 label = "FALSE" 57 label = "FALSE"
58 elif label == "true": 58 elif label == "true":
59 label = "TRUE" 59 label = "TRUE"
60 60
61 cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " 61 cmd = (r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" "
62 + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " 62 + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" "
63 + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file) 63 + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file))
64 os.system(cmd) 64 os.system(cmd)
65 time.sleep(3) 65 time.sleep(3)
66 66
67 open('./output.txt') 67 open('./output.txt')
68 os.rename('output.txt', str(output_file_name)) 68 os.rename('output.txt', str(output_file_name))